antaress package

Subpackages

• antaress.ANTARESS_analysis package
  • Subpackages
    • antaress.ANTARESS_analysis.arome package
      • Subpackages
      • Module contents
  • Submodules
    • antaress.ANTARESS_analysis.ANTARESS_ana_comm module
      • par_formatting_inst_vis()
      • prior_check()
      • prior_def()
      • MCMC_walkers_check()
      • model_par_names()
      • model_par_names_txt()
      • model_par_units()
      • init_model_par()
      • init_fit_routines()
      • init_joined_routines_inst()
      • init_joined_routines_vis()
      • init_joined_routines_vis_fit()
      • PCA_init()
      • PCA_init_prof()
      • trim_prof()
      • calc_chi_Prof()
      • sub_calc_chi_Prof()
      • com_joint_fits()
      • FIT_joined_Prof()
      • outputs_Prof()
      • com_single_fits()
      • FIT_single_Prof()
      • prior_sini_geom()
      • prior_cosi()
      • prior_sini()
      • prior_b()
      • prior_DR()
      • prior_vsini()
      • prior_vsini_deriv()
      • prior_contrast()
      • prior_FWHM_vsini()
      • com_joint_postproc()
      • conv_cosistar()
      • conv_CF_intr_meas()
    • antaress.ANTARESS_analysis.ANTARESS_inst_resp module
      • flag_err_inst()
      • return_Gba()
      • return_spec_root()
      • return_spec_tell()
      • return_spec_nord()
      • return_SNR_orders()
      • return_cen_wav_ord()
      • return_edge_wav_ord()
      • return_pix_size()
      • resamp_st_prof_tab()
      • def_st_prof_tab()
      • return_resolv()
      • calc_FWHM_inst()
      • get_FWHM_inst()
      • open_resolution_map()
      • convol_prof()
      • cond_conv_st_prof_tab()
      • conv_st_prof_tab()
      • var_convol_tell_sp_slow()
      • var_convol_tell_sp()
    • antaress.ANTARESS_analysis.ANTARESS_joined_atm module
      • joined_Atm_ana()
      • fit_CCFatm_all()
      • fit_CCFatm_prop()
    • antaress.ANTARESS_analysis.ANTARESS_joined_star module
      • joined_Star_ana()
      • MAIN_single_anaprof()
      • single_prof()
      • main_joined_DIProp()
      • FIT_joined_DIProp()
      • mod_DIProp()
      • joined_DIProp()
      • joined_DIProf()
      • joined_DIProf_exp()
      • main_joined_DiffProf()
      • joined_DiffProf()
      • joined_DiffProf_exp()
      • joined_DiffProf_corr()
      • main_joined_IntrProp()
      • FIT_joined_IntrProp()
      • joined_IntrProp()
      • main_joined_IntrProf()
      • joined_IntrProf()
    • antaress.ANTARESS_analysis.ANTARESS_model_prof module
      • dispatch_func_prof()
      • Unorm_Voigt()
      • Norm_Voigt()
      • comm_voigt_line()
      • voigt_abs_line()
      • voigt_em_line()
      • voigt()
      • voigt_em()
      • max_voigt_em()
      • dvoigt()
      • lor_em()
      • max_lor_em()
      • gauss_intr_prof()
      • gauss_herm_lin()
      • gauss_poly()
      • dgauss()
      • ana_abs_star_spec_model()
      • ana_em_star_spec_model()
      • prof_cont_model()
      • calc_macro_ker_rt()
      • calc_macro_ker_anigauss()
      • dopp_width()
      • autom_ranges()
      • calc_linevar_coord_grid()
      • calc_polymodu()
      • polycoeff_def()
      • poly_prop_calc()
      • calc_biss()
      • gauss_intr_prop()
      • cust_mod_true_prop()
      • proc_cust_mod_true_prop()
      • para_cust_mod_true_prop()
    • antaress.ANTARESS_analysis.fit_stellar_lines module
  • Module contents
• antaress.ANTARESS_conversions package
  • Submodules
    • antaress.ANTARESS_conversions.ANTARESS_binning module
      • process_bin_prof()
      • bin_prof_init_gen()
      • init_bin_prof()
      • weights_bin_prof_calc()
      • weights_bin_prof()
      • calc_bin_prof()
      • pre_calc_bin_prof()
      • conv_2D_to_1D_prep()
      • conv_2D_to_1D_weighing()
      • resample_func()
      • sub_calc_bins()
      • sub_def_bins()
      • sub_prop_bin()
    • antaress.ANTARESS_conversions.ANTARESS_conv module
      • init_conversion()
      • CCF_from_spec()
      • DI_CCF_from_spec()
      • DiffIntr_CCF_from_spec()
      • Atm_CCF_from_spec()
      • check_CCF_mask_lines()
      • new_compute_CCF()
      • sub_new_compute_CCF()
      • multithread_new_compute_CCF()
      • conv_2D_to_1D_spec()
      • conv_2D_to_1D_exp()
    • antaress.ANTARESS_conversions.ANTARESS_masks_gen module
      • def_masks()
      • line_prop_selection()
    • antaress.ANTARESS_conversions.ANTARESS_sp_cont module
      • process_spectral_cont()
      • calc_spectral_cont()
      • sub_spectral_cont()
      • para_sub_spectral_cont()
  • Module contents
• antaress.ANTARESS_corrections package
  • Submodules
    • antaress.ANTARESS_corrections.ANTARESS_calib module
      • calc_gcal()
      • model_gain()
      • model_gain_meas()
      • model_gain_ord()
      • para_model_gain()
      • para_model_gain_meas()
      • cal_piecewise_func()
    • antaress.ANTARESS_corrections.ANTARESS_detrend module
      • detrend_prof()
      • detrend_init_data()
      • detrend_save_data()
      • detrend_prof_gen_mul()
      • detrend_prof_gen_add()
      • detrend_prof_ctrst()
      • detrend_prof_FWHM()
      • pc_analysis()
      • pc_model()
      • corr_length_determination()
      • binned_stddev_fit()
    • antaress.ANTARESS_corrections.ANTARESS_flux_balance module
      • def_Mstar()
      • corr_Fbal()
      • corrFbal_vis()
      • corrFbal_totFr()
      • corr_Ftemp()
    • antaress.ANTARESS_corrections.ANTARESS_interferences module
      • MAIN_corr_wig()
      • wig_sp_init()
      • wig_trans_sp_init()
      • wig_trans_sp()
      • apply_corr_wig()
      • def_wig_tab()
      • wig_mod_cst()
      • wig_def_sampbands()
      • wig_perio_gen()
      • wig_perio_sampling()
      • wig_exp_nu_ana_all()
      • FIT_wig_submod_coord_discont()
      • wig_submod_coord_discont()
      • FIT_wig_amp_nu_poly()
      • wig_amp_nu_poly()
      • wig_ampmod_nu_poly()
      • FIT_wig_freq_nu()
      • wig_freq_nu()
      • wig_intfreq_nu()
      • FIT_wig_phi_nu()
      • wig_phi_nu()
      • FIT_calc_wig_mod_nu()
      • calc_wig_mod_nu()
      • FIT_calc_wig_mod_nu_t()
      • calc_wig_mod_nu_t()
      • calc_chrom_coord()
      • plot_wig_chrom_axis()
      • plot_bin_spec()
      • plot_screening()
      • plot_sampling_perio()
      • plot_global_perio()
      • plot_wig_exp_nu_ana()
      • plot_sampling_spec()
      • plot_wig_glob()
      • plot_rms_wig()
      • corr_fring()
      • FIT_fring_mod()
      • fring_mod()
    • antaress.ANTARESS_corrections.ANTARESS_interferences copie 2 module
    • antaress.ANTARESS_corrections.ANTARESS_peaks module
      • corr_cosm()
      • corr_cosm_prep()
      • corr_cosm_vis()
      • corr_cosm_exp()
      • MAIN_permpeak()
      • multithread_permpeak_flag()
      • permpeak_flag()
      • permpeak_mask()
      • corr_permpeak()
    • antaress.ANTARESS_corrections.ANTARESS_sp_reduc module
      • red_sp_data_instru()
      • lim_sp_range()
      • extended_com()
    • antaress.ANTARESS_corrections.ANTARESS_tellurics module
      • corr_tell_glob()
      • corr_tell_autom()
      • corr_tell_autom_vis()
      • corr_tell_vis()
      • Run_ATC()
      • corr_emtell_vis()
      • corr_atlas()
      • proc_atlas_band()
      • fit_atlas_band()
      • ana_atlas_band()
      • corr_atlas_band()
      • sub_corr_atlas_band()
      • plot_atlas_band()
      • plot_exp_spec()
  • Module contents
• antaress.ANTARESS_general package
  • Submodules
    • antaress.ANTARESS_general.constant_data module
      • def_electrans_prop()
    • antaress.ANTARESS_general.minim_routines module
      • up_var_par()
      • par_formatting()
      • gen_hrand_chain()
      • prep_step_probdist()
      • ln_prior_func()
      • ln_prior_func_ptmcmc()
      • ln_prior_func_NS()
      • global_ln_prior_func()
      • sub_ln_lkhood_func()
      • ln_lkhood_func_mcmc()
      • ln_lkhood_func_ptmcmc()
      • ln_lkhood_func_ns()
      • ln_prob_func_mcmc()
      • ln_prob_func_lmfit()
      • prep_step_probdist_Pyro()
      • SplitNormal
      • fit_func_pyro()
      • lmfit_fitting_method_check()
      • MCMC_fitting_method_check()
      • init_fit()
      • call_lmfit()
      • call_MCMC()
      • call_MCMC_Aff_Inv()
      • call_MCMC_PT()
      • call_MCMC_Pyro()
      • call_NS()
      • fit_merit()
      • compute_Hessian()
      • MCMC_corr_length()
      • sub_MCMC_corr_length()
      • parallel_sub_MCMC_corr_length()
      • MCMC_thin_chains()
      • MCMC_GR_stat()
      • MCMC_retrieve_sample()
      • MCMC_HDI()
      • prep_MCMC_HDI()
      • PDF_hist()
      • PDF_smooth()
      • quantile()
      • MCMC_estimates()
      • postMCMCwrapper_1()
      • postMCMCwrapper_2()
      • MCMC_plot_chains()
      • MCMC_plot_chains_chi2()
      • MCMC_plot_merged_chains()
      • MCMC_corner_plot()
      • MCMC_corner_plot_hist2d()
    • antaress.ANTARESS_general.utils module
      • time_count()
      • npint()
      • default_func()
      • nantest()
      • stop()
      • find_between()
      • dicval()
      • get_time()
      • end()
      • get_pw10()
      • dup_edges()
      • dict_to_params()
      • ClippedPoly
      • ClippedSpline
      • np_where1D()
      • step_range()
      • closest()
      • closest_Ndim()
      • closest_arr()
      • findgen()
      • upsample()
      • def_edge_tab()
      • check_data()
      • dataload_npz()
      • datasave_npz()
      • path_nonpz()
      • path()
      • path_singslash()
      • import_module()
      • long_to_arMCt()
      • is_odd()
      • factrial()
      • closest_mod()
      • conv_log()
      • np_hyp2f2()
      • dichotomy()
      • convol_contin()
      • planck()
      • air_index()
      • gen_specdopshift()
      • rel_lon_specdopshift()
      • conv_flux2ph()
      • compute_sun_coordinates()
      • MAIN_multithread()
      • init_parallel_func()
  • Module contents
• antaress.ANTARESS_grids package
  • Submodules
    • antaress.ANTARESS_grids.ANTARESS_coord module
      • coord_expos()
      • coord_expos_ar()
      • pulsation_model()
      • calc_Kstar()
      • calc_rv_star()
      • calc_rv_star_HR()
      • Kepler_func()
      • calc_mean_anom_TR()
      • calc_true_anom()
      • calc_pl_coord()
      • calc_pl_coord_plots()
      • calc_zLOS_oblate()
      • excl_plrange()
      • calc_ar_coord()
      • calc_ar_tiles()
      • get_timeorbit()
      • conv_phase()
      • calc_tr_contacts()
      • eclipse_status()
      • eclipse_idx()
      • pl_limb_in_oblate_star()
      • frameconv_skyorb_to_skystar()
      • frameconv_skystar_to_skyorb()
      • frameconv_skystar_to_star()
      • frameconv_star_to_skystar()
    • antaress.ANTARESS_grids.ANTARESS_occ_grid module
      • calc_tr_lc()
      • calc_plocc_ar_prop()
      • up_plocc_arocc_prop()
      • sub_calc_plocc_ar_prop()
      • calc_mean_occ_region_prop()
      • calc_mean_occ_region_line()
      • calc_occ_region_prop()
      • sum_region_prop()
      • occ_region_grid()
      • theo_intr2loc()
      • calc_loc_line_prof()
      • CFunctionWrapper
      • coadd_loc_line_prof()
      • coadd_loc_OS_prof()
      • coadd_loc_gauss_prof()
      • coadd_loc_voigt_prof()
      • coadd_loc_dvoigt_prof()
      • coadd_loc_cgauss_prof()
      • coadd_loc_dgauss_prof()
      • coadd_loc_pgauss_prof()
      • use_C_coadd_loc_OS_prof()
      • use_C_coadd_loc_gauss_prof()
      • use_C_coadd_loc_voigt_prof()
      • use_C_coadd_loc_dvoigt_prof()
      • use_C_coadd_loc_cgauss_prof()
      • use_C_coadd_loc_dgauss_prof()
      • use_C_coadd_loc_pgauss_prof()
      • gen_DI_prof()
      • discrete_star_prof_func()
      • plocc_prof()
      • init_surf_shift()
      • def_surf_shift()
      • calc_plocced_tiles()
      • generate_ar_prop()
      • retrieve_ar_prop_from_param()
      • calc_ar_region_prop()
    • antaress.ANTARESS_grids.ANTARESS_prof_grid module
      • var_stellar_prop()
      • init_sp_polcont()
      • init_st_intr_prof()
      • gen_theo_atm()
      • gen_theo_intr_prof()
      • init_custom_DI_prof()
    • antaress.ANTARESS_grids.ANTARESS_star_grid module
      • calc_RVrot()
      • calc_CB_RV()
      • calc_GD()
      • get_LD_coeff()
      • calc_LD()
      • calc_Isurf_grid()
      • calc_st_sky()
      • model_star()
      • up_model_star()
  • Module contents
• antaress.ANTARESS_launch package
  • Submodules
    • antaress.ANTARESS_launch.ANTARESS_gridrun module
      • ANTARESS_gridrun()
    • antaress.ANTARESS_launch.ANTARESS_launcher module
      • ANTARESS_launcher()
      • copy_settings_files_to_save_dir()
      • ANTARESS_DACE_launcher()
      • ANTARESS_DACE_launcher_RVs()
      • ANTARESS_launcher_CCFmask()
      • ANTARESS_launcher_init()
      • ANTARESS_NIGHT_proc()
    • antaress.ANTARESS_launch.ANTARESS_settings module
      • ANTARESS_settings()
      • ANTARESS_2D_1D_settings()
      • ANTARESS_CCF_settings()
      • ANTARESS_fit_prof_settings()
      • ANTARESS_fit_mod_settings()
      • ANTARESS_fit_def_settings()
    • antaress.ANTARESS_launch.ANTARESS_systems module
      • get_system_params()
  • Module contents
• antaress.ANTARESS_plots package
  • Submodules
    • antaress.ANTARESS_plots.ANTARESS_plot_settings module
      • gen_plot_default()
      • ANTARESS_plot_settings()
    • antaress.ANTARESS_plots.ANTARESS_plots_all module
      • ANTARESS_plot_functions()
      • get_tell_lines()
      • sub_plot_prof_init()
      • get_data_path()
      • sub_plot_prof_dir()
      • sub_plot_prof_multi()
      • sub_plot_prof_multi2()
      • sub_plot_prof_multi3()
      • sub_plot_prof()
      • sub_plot_prof_frame()
      • pre_proc_DI_exp()
      • plot_idx_ord()
      • end_plot_prof()
      • gen_GIF()
      • calc_occ_plot()
      • trans_wig_mod()
      • trans_commons_exp()
      • trans_mean()
      • trans_disp()
      • sub_dist_CCFmasks()
      • dist1D_stlines_CCFmasks()
      • dist2D_stlines_CCFmasks()
      • doppler_track_plots()
      • sub_2D_map()
      • sub_plot_all_prof()
      • sub_plot_CCF_prop()
      • sub_plot_chi2_prop()
      • sub_plot_DI_trans()
      • sub_plot_DI_Intr_binprof()
      • sub_tr_contacts()
    • antaress.ANTARESS_plots.utils_plots module
      • custom_axis()
      • scaled_title()
      • autom_range_ext()
      • autom_tick_prop()
      • autom_logtick_prop()
      • adjust_isosize()
      • adjust_3D_isosize()
      • truncate_colormap()
      • stackrel()
      • mscatter()
      • plot_shade_range()
      • sub_plot_shade_range()
  • Module contents
• antaress.ANTARESS_process package
  • Submodules
    • antaress.ANTARESS_process.ANTARESS_data_align module
      • align_data()
    • antaress.ANTARESS_process.ANTARESS_data_process module
      • init_extract_prof_path()
      • align_profiles()
      • rescale_profiles()
      • extract_diff_profiles()
      • sub_extract_diff_profiles()
      • extract_intr_profiles()
      • calc_Intr_mean_cont()
      • extract_pl_profiles()
      • EvE_outputs()
    • antaress.ANTARESS_process.ANTARESS_main module
      • ANTARESS_settings_overwrite()
      • ANTARESS_main()
      • conv_2D_to_1D_gen_functions()
      • bin_gen_functions()
      • init_gen()
      • init_inst()
      • mask_upload()
      • init_vis()
      • update_inst()
      • update_gen()
    • antaress.ANTARESS_process.ANTARESS_plocc_spec module
      • def_in_plocc_profiles()
      • plocc_prof_meas()
      • plocc_ar_prof_globmod()
      • plocc_prof_indivmod()
      • plocc_prof_rec()
      • def_diff_profiles()
      • eval_diff_profiles()
  • Module contents

Module contents